What do you mean? Safe mode is a way to load Windows in a bare-bones
configuration - it's something you *run*. It's not something you *do* - if
that makes sense.
Once you have started Windows in Safe Mode, you just shut down the regular
way.
Safe mode is a startup option that disables startup programs and
nonessential services and loads only a minimal amount of drivers to create
an environment useful for troubleshooting and diagnosing problems.
If you want to shut down in safe mode, open the Task Manager, kill every
process that you can and then shut down.
It also has flags (calling arguments: -r (restart), ...)
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