From the same reskit chapter:
"Flushing Data
In Windows NT, data is written to the Registry only when a flush occurs,
which happens after changed data ages past a few seconds, or when an
application intentionally flushes the data to the hard disk.
The system performs the following flush process for all hives (except
for the System hive):
1. All changed data is written to the hive's .log file along with a map
of where it is in the hive, and then a flush is performed on the .log
file. All changed data has now been written in the .log file.
2. The first sector of the hive file is marked to indicate that the
file is in transition.
3. The changed data is written to the hive file.
4. The hive file is marked as completed.
Note If the system shuts down between steps 2 and 4, when the hive is
next loaded at startup (unless it's a profile hive that is loaded at
logon), the system sees the mark left in step 2, and proceeds to recover
the hive using the changes contained in the .log file. That is, the .log
files are not used if the hive is not in transition. If the hive is in
transition, it cannot be loaded without the .log file.
A different flush process is used for the System hive because it is an
important element during system startup and is used too early during
startup to be recovered as described in the previous flush process.
The System.alt file contains a copy of the data contained in the System
file. During the flush process, changes are marked, written, and then
marked as done. Then the same flush process is followed for the
System.alt file. If there is a power failure, hardware failure, or
software problems at any point during the process, either the System or
System.alt file contains the correct information.
The System.alt file is similar to a .log file except that at load time,
rather than having to reapply the logged changes, the system just
switches to System.alt. The System.alt file is not needed unless the
System hive is in transition.
User Profile Hives
Each time a new user logs on to a computer, a new hive is created for
that user with a separate file for the user profile. The system
administrator can copy a user profile file to a different directory and
view, repair, or copy entries to another computer by using Registry
Editor. For specific information on this feature, see "Managing User
Profiles Through the Registry" in Chapter 25, "Configuration Management
and the Registry." For information about the hive for the default
profile, see "HKEY_USERS" later in this chapter."
John